If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 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'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 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'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 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'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ), 'gf_id' => 'HOM05D000592', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000592' ), 'data_identifier' => 'HOM05D000592', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000592', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '944', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22810' => 'bna', 'A01p32430' => 'bna', 'A02p07810' => 'bna', 'A03p02220' => 'bna', 'A03p12310' => 'bna', 'A03p17080' => 'bna', 'A04p23230' => 'bna', 'A05p00110' => 'bna', 'A05p25950' => 'bna', 'A09p02100' => 'bna', 'A09p68300' => 'bna', 'A09p68360' => 'bna', 'A10p01710' => 'bna', 'A10p02000' => 'bna', 'A10p15930' => 'bna', 'Aa31LG11G6030' => 'aar', 'Aa31LG11G90' => 'aar', 'Aa31LG1G29350' => 'aar', 'Aa31LG1G9120' => 'aar', 'Aa31LG1G9450' => 'aar', 'Aa31LG5G2330' => 'aar', 'Aa31LG5G6270' => 'aar', 'Aa31LG8G9280' => 'aar', 'Aa31LG9G2610' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.52' => 'aag', 'Actinidia11628' => 'ach', 'Actinidia13636' => 'ach', 'Actinidia21136' => 'ach', 'Actinidia21137' => 'ach', 'Actinidia23160' => 'ach', 'Actinidia23534' => 'ach', 'Actinidia23535' => 'ach', 'Actinidia24280' => 'ach', 'Actinidia24918' => 'ach', 'Actinidia30596' => 'ach', 'Actinidia40125' => 'ach', 'Ah.02g111260' => 'amhyb', 'Ah.07g204160' => 'amhyb', 'Ah.08g212690' => 'amhyb', 'Ah.08g215540' => 'amhyb', 'Ah.11g050330' => 'amhyb', 'Ah.12g064480' => 'amhyb', 'Ah.13g067540' => 'amhyb', 'Ah.15g095920' => 'amhyb', 'AL1G12540' => 'aly', 'AL1G12970' => 'aly', 'AL39U10110' => 'aly', 'AL3G37110' => 'aly', 'AL4G25380' => 'aly', 'AL4G47510' => 'aly', 'AL6G15020' => 'aly', 'AL6G49770' => 'aly', 'AL6G50320' => 'aly', 'AL7G41160' => 'aly', 'AL8G34420' => 'aly', 'Aqoxy2G03128' => 'aox', 'Aqoxy2G03441' => 'aox', 'Aqoxy4G03282' => 'aox', 'Aqoxy5G00422' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0YJA3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18PYAU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IQ408' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P8G4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76NSS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFV0LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1DBA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4CAJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E13XA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJAW7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K39AEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M530PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML916E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V75EHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRQ19F' => 'arhy', 'AT1G03080' => 'ath', 'AT1G03470' => 'ath', 'AT2G30500' => 'ath', 'AT2G47920' => 'ath', 'AT3G22790' => 'ath', 'AT4G02710' => 'ath', 'AT4G03153' => 'ath', 'AT4G14760' => 'ath', 'AT5G05180' => 'ath', 'AT5G58320' => 'ath', 'ATR0083G018' => 'atr', 'ATR0580G356' => 'atr', 'ATR0582G078' => 'atr', 'ATR0665G025' => 'atr', 'ATR0680G089' => 'atr', 'ATR0706G143' => 'atr', 'ATR1120G145' => 'atr', 'ATR1127G187' => 'atr', 'Atru.chr10.2335' => 'acertr', 'Atru.chr12.190' => 'acertr', 'Atru.chr4.2386' => 'acertr', 'Atru.chr4.2409' => 'acertr', 'Atru.chr5.1276' => 'acertr', 'Atru.chr5.1495' => 'acertr', 'Atru.chr5.1496' => 'acertr', 'Atru.ctg752_3.19' => 'acertr', 'Atru.ctg752_3.20' => 'acertr', 'Atru.ctg752_3.21' => 'acertr', 'Atru.ctg752_3.22' => 'acertr', 'Atru.ctg752_3.23' => 'acertr', 'Atru.ctg752_3.24' => 'acertr', 'AUR62009736' => 'cqu', 'AUR62011988' => 'cqu', 'AUR62024950' => 'cqu', 'AUR62030589' => 'cqu', 'AUR62032305' => 'cqu', 'AUR62033645' => 'cqu', 'AUR62034626' => 'cqu', 'AUR62034737' => 'cqu', 'AUR62036208' => 'cqu', 'AUR62036651' => 'cqu', 'BcaB01g01469' => 'bca', 'BcaB01g02016' => 'bca', 'BcaB01g04089' => 'bca', 'BcaB01g04093' => 'bca', 'BcaB01g04098' => 'bca', 'BcaB01g04099' => 'bca', 'BcaB01g04531' => 'bca', 'BcaB01g04532' => 'bca', 'BcaB01g05720' => 'bca', 'BcaB01g05941' => 'bca', 'BcaB02g06930' => 'bca', 'BcaB02g08725' => 'bca', 'BcaB03g15742' => 'bca', 'BcaB05g22420' => 'bca', 'BcaB06g28371' => 'bca', 'BcaB08g36169' => 'bca', 'BcaC01g05416' => 'bca', 'BcaC01g06004' => 'bca', 'BcaC02g08017' => 'bca', 'BcaC02g12536' => 'bca', 'BcaC03g14106' => 'bca', 'BcaC04g19878' => 'bca', 'BcaC04g24007' => 'bca', 'BcaC05g24527' => 'bca', 'BcaC05g24641' => 'bca', 'BcaC06g32227' => 'bca', 'BcaC07g40123' => 'bca', 'BcaC07g42261' => 'bca', 'BcaC07g42267' => 'bca', 'BcaC07g42268' => 'bca', 'BcaC09g50157' => 'bca', 'BcaNung00336' => 'bca', 'BcaNung05612' => 'bca', 'BcaNung05615' => 'bca', 'BcaNung05616' => 'bca', 'BolC1t02767H' => 'bol', 'BolC1t04110H' => 'bol', 'BolC2t07457H' => 'bol', 'BolC3t12808H' => 'bol', 'BolC3t13887H' => 'bol', 'BolC3t14392H' => 'bol', 'BolC3t20792H' => 'bol', 'BolC4t21650H' => 'bol', 'BolC4t27446H' => 'bol', 'BolC5t28949H' => 'bol', 'BolC5t28974H' => 'bol', 'BolC5t32773H' => 'bol', 'BolC9t53148H' => 'bol', 'BolC9t57876H' => 'bol', 'BraA01t02193Z' => 'bra', 'BraA01t03373Z' => 'bra', 'BraA02t05854Z' => 'bra', 'BraA03t09586Z' => 'bra', 'BraA03t10542Z' => 'bra', 'BraA03t10984Z' => 'bra', 'BraA04t17850Z' => 'bra', 'BraA05t19007Z' => 'bra', 'BraA05t21480Z' => 'bra', 'BraA09t35859Z' => 'bra', 'BraA09t42166Z' => 'bra', 'BraA09t42172Z' => 'bra', 'BraA10t42447Z' => 'bra', 'BraA10t42473Z' => 'bra', 'BraA10t43631Z' => 'bra', 'C01p28380' => 'bna', 'C01p41560' => 'bna', 'C02p13450' => 'bna', 'C03p02560' => 'bna', 'C03p14450' => 'bna', 'C03p20170' => 'bna', 'C03p20180' => 'bna', 'C04p00030' => 'bna', 'C04p59380' => 'bna', 'C05p01700' => 'bna', 'C05p01950' => 'bna', 'C05p40320' => 'bna', 'C08p52860' => 'bna', 'C08p52930' => 'bna', 'C09p02190' => 'bna', 'C09p50200' => 'bna', 'C09p71530' => 'bna', 'CAN.G1209.36' => 'can', 'CAN.G1229.1' => 'can', 'CAN.G1402.9' => 'can', 'CAN.G2895.1' => 'can', 'CAN.G426.29' => 'can', 'CAN.G433.16' => 'can', 'CAN.G572.33' => 'can', 'CANSAT01G2883' => 'cansat', 'CANSAT25G0057' => 'cansat', 'CANSAT25G0123' => 'cansat', 'CANSAT54G0237' => 'cansat', 'CANSAT56G2503' => 'cansat', 'CANSAT78G1002' => 'cansat', 'CARHR002430' => 'chi', 'CARHR002840' => 'chi', 'CARHR098630' => 'chi', 'CARHR123950' => 'chi', 'CARHR143310' => 'chi', 'CARHR208080' => 'chi', 'CARHR221290' => 'chi', 'CARHR251010' => 'chi', 'CARHR251600' => 'chi', 'CARHR272130' => 'chi', 'Carub.0001s0222' => 'cru', 'Carub.0001s0260' => 'cru', 'Carub.0003s2291' => 'cru', 'Carub.0004s1166' => 'cru', 'Carub.0004s3064' => 'cru', 'Carub.0006s0411' => 'cru', 'Carub.0006s3389' => 'cru', 'Carub.0006s3441' => 'cru', 'Carub.0007s2738' => 'cru', 'Carub.0008s1886' => 'cru', 'Ca_08619_v3' => 'car', 'Ca_08627_v3' => 'car', 'Ca_09114_v3' => 'car', 'Ca_09737_v3' => 'car', 'Ca_10374_v3' => 'car', 'Ca_10861_v3' => 'car', 'Ca_15066_v3' => 'car', 'Ca_24407_v3' => 'car', 'Ca_25477_v3' => 'car', 'Ca_27035_v3' => 'car', 'Ca_29869_v3' => 'car', 'Cc00_g18900' => 'ccan', 'Cc01_g20260' => 'ccan', 'Cc02_g05180' => 'ccan', 'Cc02_g30990' => 'ccan', 'Cc03_g04140' => 'ccan', 'Cc11_g15160' => 'ccan', 'CDE01G0389' => 'cde', 'CDE02G0335' => 'cde', 'CDE02G0691' => 'cde', 'CDE02G2731' => 'cde', 'CDE04G1888' => 'cde', 'CDE04G3460' => 'cde', 'CDE05G1634' => 'cde', 'CDE05G2065' => 'cde', 'CDE05G2635' => 'cde', 'CDE05G2981' => 'cde', 'CDE06G0173' => 'cde', 'CDE06G0447' => 'cde', 'CDE07G0488' => 'cde', 'CDE07G0502' => 'cde', 'CDE07G1883' => 'cde', 'CDE10G0643' => 'cde', 'CDE12G0767' => 'cde', 'CDE12G0881' => 'cde', 'Cfa006032' => 'cfa', 'Cfa006181' => 'cfa', 'Cfa008459' => 'cfa', 'Cfa009434' => 'cfa', 'Cfa011841' => 'cfa', 'Ciclev10000625m.g' => 'ccl', 'Ciclev10004130m.g' => 'ccl', 'Ciclev10018459m.g' => 'ccl', 'Ciclev10021389m.g' => 'ccl', 'Ciclev10031096m.g' => 'ccl', 'CiPaw.01G197200' => 'cil', 'CiPaw.02G122400' => 'cil', 'CiPaw.07G088500' => 'cil', 'CiPaw.07G100400' => 'cil', 'CiPaw.08G108300' => 'cil', 'CiPaw.13G062900' => 'cil', 'ClCG03G000050' => 'cla', 'ClCG05G004940' => 'cla', 'ClCG07G000430' => 'cla', 'ClCG09G007330' => 'cla', 'ClCG11G005550' => 'cla', 'COL.COLO4_05291' => 'col', 'COL.COLO4_06446' => 'col', 'COL.COLO4_08024' => 'col', 'COL.COLO4_08820' => 'col', 'COL.COLO4_09053' => 'col', 'COL.COLO4_11219' => 'col', 'COL.COLO4_19478' => 'col', 'COL.COLO4_21542' => 'col', 'Cpa.g.sc1647.1' => 'cpa', 'Cpa.g.sc1647.2' => 'cpa', 'Cpa.g.sc19.38' => 'cpa', 'Cpa.g.sc2.288' => 'cpa', 'Cpa.g.sc58.60' => 'cpa', 'Cpa.g.sc9.166' => 'cpa', 'CsaV3_1G004810' => 'csa', 'CsaV3_2G013610' => 'csa', 'CsaV3_3G013000' => 'csa', 'CsaV3_5G039300' => 'csa', 'CsaV3_7G027820' => 'csa', 'CSS0001483' => 'camsi', 'CSS0004148' => 'camsi', 'CSS0006330' => 'camsi', 'CSS0008170' => 'camsi', 'CSS0009491' => 'camsi', 'CSS0016542' => 'camsi', 'CSS0017152' => 'camsi', 'CSS0026924' => 'camsi', 'CSS0030707' => 'camsi', 'CSS0031408' => 'camsi', 'CSS0032582' => 'camsi', 'CSS0035482' => 'camsi', 'CSS0036142' => 'camsi', 'CSS0036597' => 'camsi', 'CSS0037517' => 'camsi', 'CSS0037955' => 'camsi', 'CSS0042524' => 'camsi', 'CSS0044359' => 'camsi', 'CSS0046034' => 'camsi', 'CSS0047619' => 'camsi', 'DCAR_000506' => 'dca', 'DCAR_005860' => 'dca', 'DCAR_012427' => 'dca', 'DCAR_012500' => 'dca', 'DCAR_020156' => 'dca', 'DCAR_024179' => 'dca', 'DCAR_030679' => 'dca', 'Dinv11302' => 'din', 'Dinv12285' => 'din', 'Dinv14033' => 'din', 'Dinv21860' => 'din', 'Dinv22512' => 'din', 'Dinv28735' => 'din', 'Dinv29866' => 'din', 'Dinv31633' => 'din', 'Dinv32897' => 'din', 'Dinv34500' => 'din', 'Dinv34787' => 'din', 'Dinv44563' => 'din', 'Duzib114G0734' => 'dzi', 'Duzib132G1222' => 'dzi', 'Duzib133G0431' => 'dzi', 'Duzib133G0925' => 'dzi', 'Duzib138G0632' => 'dzi', 'Duzib138G1205' => 'dzi', 'Duzib151G0506' => 'dzi', 'Duzib168G1087' => 'dzi', 'Duzib211G0338' => 'dzi', 'Duzib212G0402' => 'dzi', 'ECA240G1146' => 'eca', 'ECA246G3172' => 'eca', 'ECA247G3719' => 'eca', 'ECA247G3974' => 'eca', 'ECA248G0951' => 'eca', 'ECA248G1301' => 'eca', 'ECA248G1606' => 'eca', 'EL10Ac2g02670' => 'bvu', 'EL10Ac3g06467' => 'bvu', 'EL10Ac5g10519' => 'bvu', 'EL10Ac7g15848' => 'bvu', 'EL10Ac7g17385' => 'bvu', 'Eucgr.B04033' => 'egr', 'Eucgr.C01645' => 'egr', 'Eucgr.G01962' => 'egr', 'Eucgr.G03150' => 'egr', 'Eucgr.H01415' => 'egr', 'Eucgr.H03424' => 'egr', 'Eucgr.K03339' => 'egr', 'Eucgr.K03438' => 'egr', 'FAN01G3120' => 'fan', 'FAN06G2529' => 'fan', 'FAN07G1168' => 'fan', 'FAN10G3566' => 'fan', 'FAN11G1487' => 'fan', 'FAN12G2177' => 'fan', 'FAN15G1759' => 'fan', 'FAN15G2415' => 'fan', 'FAN16G3701' => 'fan', 'FAN17G2167' => 'fan', 'FAN20G2100' => 'fan', 'FAN21G2642' => 'fan', 'FAN22G2244' => 'fan', 'FAN24G0200' => 'fan', 'FAN24G2442' => 'fan', 'FAN25G3419' => 'fan', 'FAN27G0464' => 'fan', 'FAN27G1209' => 'fan', 'FAN27G2684' => 'fan', 'FvH4_2g23102' => 'fve', 'FvH4_2g24780' => 'fve', 'FvH4_3g40650' => 'fve', 'FvH4_4g00822' => 'fve', 'FvH4_4g22860' => 'fve', 'FvH4_7g26161' => 'fve', 'Glyma.01G232850' => 'gma', 'Glyma.01G232901' => 'gma', 'Glyma.01G236400' => 'gma', 'Glyma.02G145200' => 'gma', 'Glyma.02G152600' => 'gma', 'Glyma.02G236600' => 'gma', 'Glyma.03G156600' => 'gma', 'Glyma.03G209100' => 'gma', 'Glyma.10G021600' => 'gma', 'Glyma.10G028800' => 'gma', 'Glyma.10G245400' => 'gma', 'Glyma.11G006800' => 'gma', 'Glyma.11G199200' => 'gma', 'Glyma.13G048000' => 'gma', 'Glyma.14G205100' => 'gma', 'Glyma.17G171400' => 'gma', 'Glyma.18G051600' => 'gma', 'Glyma.18G155967' => 'gma', 'Glyma.19G158900' => 'gma', 'Glyma.19G206300' => 'gma', 'Glyma.20G149200' => 'gma', 'Gohir.A03G028700' => 'ghi', 'Gohir.A03G151700' => 'ghi', 'Gohir.A04G100900' => 'ghi', 'Gohir.A05G107500' => 'ghi', 'Gohir.A08G064800' => 'ghi', 'Gohir.A08G072600' => 'ghi', 'Gohir.A08G116300' => 'ghi', 'Gohir.A08G187000' => 'ghi', 'Gohir.A09G218100' => 'ghi', 'Gohir.A11G117900' => 'ghi', 'Gohir.A11G125100' => 'ghi', 'Gohir.A12G003400' => 'ghi', 'Gohir.A13G008100' => 'ghi', 'Gohir.A13G233300' => 'ghi', 'Gohir.D02G174800' => 'ghi', 'Gohir.D03G139900' => 'ghi', 'Gohir.D04G140150' => 'ghi', 'Gohir.D05G107700' => 'ghi', 'Gohir.D08G073300' => 'ghi', 'Gohir.D08G073333' => 'ghi', 'Gohir.D08G073366' => 'ghi', 'Gohir.D08G080600' => 'ghi', 'Gohir.D08G137150' => 'ghi', 'Gohir.D08G205300' => 'ghi', 'Gohir.D09G220580' => 'ghi', 'Gohir.D09G220660' => 'ghi', 'Gohir.D11G122800' => 'ghi', 'Gohir.D11G130300' => 'ghi', 'Gohir.D12G003100' => 'ghi', 'Gohir.D13G008266' => 'ghi', 'Gohir.D13G008450' => 'ghi', 'Gohir.D13G008601' => 'ghi', 'Gohir.D13G008700' => 'ghi', 'Gohir.D13G238900' => 'ghi', 'Gorai.003G146700' => 'gra', 'Gorai.004G077700' => 'gra', 'Gorai.004G085700' => 'gra', 'Gorai.004G140400' => 'gra', 'Gorai.004G217300' => 'gra', 'Gorai.005G196400' => 'gra', 'Gorai.006G241600' => 'gra', 'Gorai.007G131700' => 'gra', 'Gorai.007G139300' => 'gra', 'Gorai.008G002900' => 'gra', 'Gorai.009G111800' => 'gra', 'Gorai.012G125100' => 'gra', 'Gorai.013G008700' => 'gra', 'Gorai.013G009100' => 'gra', 'Gorai.013G009300' => 'gra', 'Gorai.013G009500' => 'gra', 'Gorai.013G269800' => 'gra', 'GSVIVG01001195001' => 'vvi', 'GSVIVG01011002001' => 'vvi', 'GSVIVG01018023001' => 'vvi', 'GSVIVG01024551001' => 'vvi', 'GSVIVG01032654001' => 'vvi', 'GSVIVG01038202001' => 'vvi', 'HanXRQChr01g0002751' => 'han', 'HanXRQChr01g0006361' => 'han', 'HanXRQChr01g0012991' => 'han', 'HanXRQChr03g0072561' => 'han', 'HanXRQChr08g0230281' => 'han', 'HanXRQChr09g0247271' => 'han', 'HanXRQChr10g0283281' => 'han', 'HanXRQChr11g0330131' => 'han', 'HanXRQChr11g0337361' => 'han', 'HanXRQChr11g0338271' => 'han', 'HanXRQChr14g0434301' => 'han', 'HanXRQChr15g0490691' => 'han', 'Haze_04665' => 'cav', 'Haze_04818' => 'cav', 'Haze_11215' => 'cav', 'Haze_24477' => 'cav', 'Hma1.2p1_0161F.1_g072140' => 'hma', 'Hma1.2p1_0209F.1_g089050' => 'hma', 'Hma1.2p1_0264F.1_g105920' => 'hma', 'Hma1.2p1_0602F.1_g187540' => 'hma', 'Hma1.2p1_1805F.1_g303110' => 'hma', 'Hma1.2p1_1924F.1_g307680' => 'hma', 'Hma1.2p1_2084F.1_g313640' => 'hma', 'Hma1.2p1_3788F.1_g337620' => 'hma', 'HPP92_000775' => 'vpl', 'HPP92_001327' => 'vpl', 'HPP92_001666' => 'vpl', 'HPP92_012117' => 'vpl', 'HPP92_012118' => 'vpl', 'HPP92_012119' => 'vpl', 'HPP92_012120' => 'vpl', 'HPP92_012127' => 'vpl', 'HPP92_012128' => 'vpl', 'HPP92_013693' => 'vpl', 'HPP92_023496' => 'vpl', 'HPP92_023545' => 'vpl', 'HPP92_023546' => 'vpl', 'HPP92_023547' => 'vpl', 'HPP92_024844' => 'vpl', 'HPP92_024983' => 'vpl', 'HPP92_026611' => 'vpl', 'HPP92_026612' => 'vpl', 'HPP92_026613' => 'vpl', 'HPP92_026614' => 'vpl', 'HPP92_026800' => 'vpl', 'Hund02847' => 'sun', 'Hund05377' => 'sun', 'Hund09522' => 'sun', 'Hund12098' => 'sun', 'Hund13435' => 'sun', 'Hund18054' => 'sun', 'Hund28036' => 'sun', 'Hund28038' => 'sun', 'Lalb_Chr01g0020071' => 'lal', 'Lalb_Chr02g0142601' => 'lal', 'Lalb_Chr04g0251731' => 'lal', 'Lalb_Chr06g0160711' => 'lal', 'Lalb_Chr06g0162831' => 'lal', 'Lalb_Chr06g0163331' => 'lal', 'Lalb_Chr09g0319931' => 'lal', 'Lalb_Chr09g0319941' => 'lal', 'Lalb_Chr09g0319951' => 'lal', 'Lalb_Chr10g0103811' => 'lal', 'Lalb_Chr11g0067681' => 'lal', 'Lalb_Chr15g0085711' => 'lal', 'Lalb_Chr16g0376421' => 'lal', 'Lalb_Chr17g0345641' => 'lal', 'Lalb_Chr18g0047481' => 'lal', 'Lalb_Chr18g0054151' => 'lal', 'Lalb_Chr21g0304761' => 'lal', 'Lalb_Chr21g0306371' => 'lal', 'Lalb_Chr21g0306701' => 'lal', 'Lalb_Chr23g0272131' => 'lal', 'Lj1A50G82' => 'lonja', 'Lj1C38T5' => 'lonja', 'Lj1g0012223' => 'lja', 'Lj1g0018997' => 'lja', 'Lj1g0022472' => 'lja', 'Lj1g0023364' => 'lja', 'Lj1P969T46' => 'lonja', 'Lj2A1103T30' => 'lonja', 'Lj2A1167T98' => 'lonja', 'Lj2C1103T3' => 'lonja', 'Lj3A729T52' => 'lonja', 'Lj5g0004600' => 'lja', 'Lj5g0008537' => 'lja', 'Lj5g0015567' => 'lja', 'Lj6C610T3' => 'lonja', 'Lj6g0013783' => 'lja', 'Lj8C52T1' => 'lonja', 'LjContig00141g0000012' => 'lja', 'LjContig00408g0023554' => 'lja', 'Lsat_1_v5_gn_3_56281' => 'lsa', 'Lsat_1_v5_gn_5_175081' => 'lsa', 'Lsat_1_v5_gn_5_185981' => 'lsa', 'Lsat_1_v5_gn_5_188841' => 'lsa', 'Lsat_1_v5_gn_7_67960' => 'lsa', 'Lsat_1_v5_gn_9_13680' => 'lsa', 'Manes.01G204900' => 'mes', 'Manes.01G213900' => 'mes', 'Manes.02G210800' => 'mes', 'Manes.03G174500' => 'mes', 'Manes.03G174800' => 'mes', 'Manes.05G068000' => 'mes', 'Manes.05G080300' => 'mes', 'Manes.07G141800' => 'mes', 'Manes.09G186700' => 'mes', 'Manes.10G003500' => 'mes', 'Manes.15G031600' => 'mes', 'Manes.18G139900' => 'mes', 'MBI15_g46693_MAGBIO' => 'mbi', 'MBI19_g04671_MAGBIO' => 'mbi', 'MD00G1192700' => 'mdo', 'MD00G1193000' => 'mdo', 'MD00G1193100' => 'mdo', 'MD01G1170000' => 'mdo', 'MD03G1050500' => 'mdo', 'MD03G1260100' => 'mdo', 'MD07G1236000' => 'mdo', 'MD07G1236100' => 'mdo', 'MD07G1236300' => 'mdo', 'MD07G1236600' => 'mdo', 'MD07G1236900' => 'mdo', 'MD11G1052600' => 'mdo', 'MD11G1280400' => 'mdo', 'MD11G1298400' => 'mdo', 'MD11G1298500' => 'mdo', 'MD13G1197900' => 'mdo', 'MD16G1128900' => 'mdo', 'MD16G1197900' => 'mdo', 'Medtr1g071540' => 'mtr', 'Medtr1g088965' => 'mtr', 'Medtr1g103160' => 'mtr', 'Medtr3g081590' => 'mtr', 'Medtr3g467610' => 'mtr', 'Medtr5g006520' => 'mtr', 'Medtr5g075490' => 'mtr', 'Medtr6g082800' => 'mtr', 'Medtr7g095410' => 'mtr', 'Medtr7g108070' => 'mtr', 'MELO3C006509.2' => 'cme', 'MELO3C014299.2' => 'cme', 'MELO3C015797.2' => 'cme', 'MELO3C020482.2' => 'cme', 'MELO3C022108.2' => 'cme', 'MELO3C032170.2' => 'cme', 'Migut.A01200' => 'egut', 'Migut.B01014' => 'egut', 'Migut.D00226' => 'egut', 'Migut.D00334' => 'egut', 'Migut.D00814' => 'egut', 'Migut.F01230' => 'egut', 'Migut.G00371' => 'egut', 'Migut.H01164' => 'egut', 'Migut.K01041' => 'egut', 'Migut.N00205' => 'egut', 'Migut.N00723' => 'egut', 'MSTRG.12713' => 'ama', 'MSTRG.160' => 'ama', 'MSTRG.17921' => 'ama', 'MSTRG.18192' => 'ama', 'MSTRG.21538' => 'ama', 'MSTRG.21540' => 'ama', 'MSTRG.21542' => 'ama', 'MSTRG.21869' => 'ama', 'MSTRG.24729' => 'ama', 'MSTRG.4052' => 'ama', 'MSTRG.9961' => 'ama', 'Nitab4.5_0000050g0270' => 'nta', 'Nitab4.5_0000085g0270' => 'nta', 'Nitab4.5_0000171g0300' => 'nta', 'Nitab4.5_0000252g0110' => 'nta', 'Nitab4.5_0000678g0080' => 'nta', 'Nitab4.5_0000824g0080' => 'nta', 'Nitab4.5_0002093g0250' => 'nta', 'Nitab4.5_0002430g0020' => 'nta', 'Nitab4.5_0002430g0030' => 'nta', 'Nitab4.5_0003249g0050' => 'nta', 'Nitab4.5_0004150g0080' => 'nta', 'Nitab4.5_0004884g0010' => 'nta', 'Nitab4.5_0005155g0020' => 'nta', 'Nitab4.5_0005979g0020' => 'nta', 'Nn1g02404' => 'nnu', 'Nn2g10263' => 'nnu', 'Nn2g14773' => 'nnu', 'Nn3g16307' => 'nnu', 'Nn3g21285' => 'nnu', 'Nn4g26043' => 'nnu', 'Nn5g26826' => 'nnu', 'Nn6g34135' => 'nnu', 'Oeu008870.1' => 'oeu', 'Oeu011387.1' => 'oeu', 'Oeu015577.1' => 'oeu', 'Oeu015578.1' => 'oeu', 'Oeu023623.1' => 'oeu', 'Oeu023883.1' => 'oeu', 'Oeu025754.1' => 'oeu', 'Oeu027193.1' => 'oeu', 'Oeu053309.1' => 'oeu', 'Oeu057555.2' => 'oeu', 'Oeu058897.1' => 'oeu', 'Oeu064004.1' => 'oeu', 'Oeu064684.1' => 'oeu', 'Os01g0167900' => 'osa', 'Os01g0168100' => 'osa', 'Os03g0103950' => 'osa', 'Os03g0104000' => 'osa', 'Os03g0161100' => 'osa', 'Os03g0637900' => 'osa', 'Os03g0638000' => 'osa', 'Os05g0168800' => 'osa', 'Os07g0666600' => 'osa', 'Os10g0422000' => 'osa', 'Os10g0422075' => 'osa', 'Os12g0605100' => 'osa', 'Os12g0605200' => 'osa', 'Peaxi162Scf00067g00621' => 'pax', 'Peaxi162Scf00073g02222' => 'pax', 'Peaxi162Scf00230g00812' => 'pax', 'Peaxi162Scf00245g00136' => 'pax', 'Peaxi162Scf00245g01313' => 'pax', 'Peaxi162Scf00395g01110' => 'pax', 'Peaxi162Scf00520g00613' => 'pax', 'Peaxi162Scf01039g00132' => 'pax', 'PGR004G1249' => 'pgr', 'PGR044G0675' => 'pgr', 'PGR044G2527' => 'pgr', 'PGR102G2955' => 'pgr', 'PGR119G0264' => 'pgr', 'PGR142G0092' => 'pgr', 'PGSC0003DMG400001834' => 'stu', 'PGSC0003DMG400007687' => 'stu', 'PGSC0003DMG400019351' => 'stu', 'PGSC0003DMG400022957' => 'stu', 'PGSC0003DMG400028772' => 'stu', 'PGSC0003DMG400030470' => 'stu', 'PGSC0003DMG400031863' => 'stu', 'Phvul.001G154100' => 'pvu', 'Phvul.001G202400' => 'pvu', 'Phvul.002G043800' => 'pvu', 'Phvul.006G079900' => 'pvu', 'Phvul.007G060600' => 'pvu', 'Phvul.007G166300' => 'pvu', 'Phvul.007G174000' => 'pvu', 'Phvul.008G246300' => 'pvu', 'Potri.002G049600' => 'ptr', 'Potri.002G207700' => 'ptr', 'Potri.003G164200' => 'ptr', 'Potri.005G213400' => 'ptr', 'Potri.008G156200' => 'ptr', 'Potri.008G156250' => 'ptr', 'Potri.010G083300' => 'ptr', 'Potri.013G158100' => 'ptr', 'Potri.014G135000' => 'ptr', 'Potri.019G061600' => 'ptr', 'Potri.019G131000' => 'ptr', 'Prupe.1G019400' => 'ppe', 'Prupe.1G217400' => 'ppe', 'Prupe.2G266000' => 'ppe', 'Prupe.3G033900' => 'ppe', 'Prupe.6G040100' => 'ppe', 'Prupe.6G289700' => 'ppe', 'Prupe.8G236300' => 'ppe', 'Prupe.8G252800' => 'ppe', 'Psat0s3955g0120' => 'psa', 'Psat1g034360' => 'psa', 'Psat2g049720' => 'psa', 'Psat3g024640' => 'psa', 'Psat3g062600' => 'psa', 'Psat3g158720' => 'psa', 'Psat3g158800' => 'psa', 'Psat4g209880' => 'psa', 'Psat5g147160' => 'psa', 'Psat6g059600' => 'psa', 'Psat6g167880' => 'psa', 'Psat6g205880' => 'psa', 'PSO017G2726' => 'pso', 'PSO017G4207' => 'pso', 'PSO017G7161' => 'pso', 'PSO063G0046' => 'pso', 'PSO063G2787' => 'pso', 'PSO170G2328' => 'pso', 'PSO170G3386' => 'pso', 'PSO170G4142' => 'pso', 'PSO170G4625' => 'pso', 'PSO170G5676' => 'pso', 'PSO210G1222' => 'pso', 'PSO210G4539' => 'pso', 'PSO445G0008' => 'pso', 'PSO675G3983' => 'pso', 'PSO732G0432' => 'pso', 'QL01p024421' => 'qlo', 'QL06p001382' => 'qlo', 'QL08p065113' => 'qlo', 'QL12p020650' => 'qlo', 'QL12p024172' => 'qlo', 'QL93p1864_0002' => 'qlo', 'RcHm_v2.0_Chr1g0372621' => 'rch', 'RcHm_v2.0_Chr2g0111811' => 'rch', 'RcHm_v2.0_Chr4g0387381' => 'rch', 'RcHm_v2.0_Chr4g0429101' => 'rch', 'RcHm_v2.0_Chr5g0073401' => 'rch', 'RcHm_v2.0_Chr6g0290321' => 'rch', 'RcHm_v2.0_Chr6g0292611' => 'rch', 'Rhsim01G0272700' => 'rsi', 'Rhsim03G0153900' => 'rsi', 'Rhsim04G0199200' => 'rsi', 'Rhsim12G0018500' => 'rsi', 'Rhsim13G0016900' => 'rsi', 'Rhsim13G0058700' => 'rsi', 'Sabra02G0040600' => 'sbr', 'Sabra02G0149800' => 'sbr', 'Sabra03G0119400' => 'sbr', 'Sabra05G0163100' => 'sbr', 'Sabra10G0059700' => 'sbr', 'Sabra13G0126900' => 'sbr', 'Sabra19G0075300' => 'sbr', 'Sabra19G0127600' => 'sbr', 'SalBow2G1384' => 'sbo', 'SalBow2G3219' => 'sbo', 'SalBow3G0718' => 'sbo', 'SalBow3G1720' => 'sbo', 'Sc05g0001220' => 'sci', 'Sc10g0003080' => 'sci', 'Sc12g0000060' => 'sci', 'Sc12g0000070' => 'sci', 'Sc17g0001230' => 'sci', 'Sc17g0005090' => 'sci', 'Sc19g0004010' => 'sci', 'Sc26g0002290' => 'sci', 'Sed0003437' => 'sed', 'Sed0005478' => 'sed', 'Sed0008526' => 'sed', 'Sed0008729' => 'sed', 'Sed0010151' => 'sed', 'Sed0022140' => 'sed', 'Sed0027882' => 'sed', 'SEGI_08741' => 'sgi', 'SEGI_12791' => 'sgi', 'SEGI_16227' => 'sgi', 'SEGI_32361' => 'sgi', 'SEGI_41083' => 'sgi', 'SGA_v2.0_scaffold11G05757' => 'sas', 'SGA_v2.0_scaffold120G32994' => 'sas', 'SGA_v2.0_scaffold138G35310' => 'sas', 'SGA_v2.0_scaffold151G36703' => 'sas', 'SGA_v2.0_scaffold160G37742' => 'sas', 'SGA_v2.0_scaffold191G40457' => 'sas', 'SGA_v2.0_scaffold1G00518' => 'sas', 'SGA_v2.0_scaffold20G09285' => 'sas', 'SGA_v2.0_scaffold308G48125' => 'sas', 'SGA_v2.0_scaffold79G25590' => 'sas', 'SHI04236' => 'shi', 'SHI09978' => 'shi', 'SHI14643' => 'shi', 'SMO141G0215' => 'smo', 'SMO336G0037' => 'smo', 'SMO337G0114' => 'smo', 'Solyc03g095600.1' => 'sly', 'Solyc08g077680.3' => 'sly', 'Solyc09g065550.4' => 'sly', 'Solyc09g074470.3' => 'sly', 'Solyc09g082510.3' => 'sly', 'Solyc10g045290.2' => 'sly', 'Sopen03g025550' => 'spe', 'Sopen08g026190' => 'spe', 'Sopen09g027300' => 'spe', 'Sopen09g029320' => 'spe', 'Sopen09g031370' => 'spe', 'Sopen10g014450' => 'spe', 'Sp1g02080' => 'spa', 'Sp1g02430' => 'spa', 'Sp3g20490' => 'spa', 'Sp4g13050' => 'spa', 'Sp4g29840' => 'spa', 'Sp6g03200' => 'spa', 'Sp6g19980' => 'spa', 'Sp6g37650' => 'spa', 'Sp7g12890' => 'spa', 'TAR362G0063' => 'tar', 'TAR365G0196' => 'tar', 'TAR365G0438' => 'tar', 'TAR365G0452' => 'tar', 'TAR365G0678' => 'tar', 'TAR374G1193' => 'tar', 'TAR622G0278' => 'tar', 'TAR623G1305' => 'tar', 'TAR633G1270' => 'tar', 'TAR633G2344' => 'tar', 'THA.LOC104801195' => 'tha', 'THA.LOC104803055' => 'tha', 'THA.LOC104808571' => 'tha', 'THA.LOC104814924' => 'tha', 'THA.LOC104816506' => 'tha', 'THA.LOC104817528' => 'tha', 'THA.LOC104825990' => 'tha', 'THA.LOC104826013' => 'tha', 'THA.LOC104827396' => 'tha', 'THA.LOC104827554' => 'tha', 'Thecc.01G273300' => 'tca', 'Thecc.01G290800' => 'tca', 'Thecc.02G194900' => 'tca', 'Thecc.04G236700' => 'tca', 'Thecc.09G364300' => 'tca', 'Thecc.10G185300' => 'tca', 'Thhalv10006534m.g' => 'esa', 'Thhalv10008490m.g' => 'esa', 'Thhalv10013298m.g' => 'esa', 'Thhalv10013570m.g' => 'esa', 'Thhalv10016516m.g' => 'esa', 'Thhalv10019883m.g' => 'esa', 'Thhalv10024203m.g' => 'esa', 'Thhalv10028372m.g' => 'esa', 'TPR.G13881' => 'tpr', 'TPR.G16923' => 'tpr', 'TPR.G22971' => 'tpr', 'TPR.G24316' => 'tpr', 'TPR.G25701' => 'tpr', 'TPR.G26081' => 'tpr', 'TPR.G26084' => 'tpr', 'TPR.G26105' => 'tpr', 'TPR.G26110' => 'tpr', 'TPR.G26116' => 'tpr', 'TPR.G32287' => 'tpr', 'TPR.G37911' => 'tpr', 'TWI09G1283' => 'twi', 'TWI12G0883' => 'twi', 'TWI14G0257' => 'twi', 'TWI18G0970' => 'twi', 'TWI53G0917' => 'twi', 'TWI53G1016' => 'twi', 'TWI59G0265' => 'twi', 'TWI79G0473' => 'twi', 'unitig_22.g5249' => 'ugi', 'unitig_22.g5270' => 'ugi', 'unitig_26.g10224' => 'ugi', 'unitig_60.g25793' => 'ugi', 'unitig_736.g22461' => 'ugi', 'unitig_747.g21113' => 'ugi', 'unitig_749.g14075' => 'ugi', 'unitig_8.g3718' => 'ugi', 'vmacro02870' => 'vma', 'vmacro06905' => 'vma', 'vmacro08360' => 'vma', 'vmacro14904' => 'vma', 'VMungo0251G3645' => 'vmu', 'VMungo0464G1869' => 'vmu', 'VMungo0540G2426' => 'vmu', 'VMungo0647G0976' => 'vmu', 'VMungo0720G0445' => 'vmu', 'VMungo0720G2930' => 'vmu', 'VMungo1127G1958' => 'vmu', 'VMungo1215G1460' => 'vmu', 'VMungo1309G1617' => 'vmu', 'VMungo1383G0169' => 'vmu', 'VMungo1383G1188' => 'vmu', 'Zm00001eb031290' => 'zma', 'Zm00001eb047830' => 'zma', 'Zm00001eb050880' => 'zma', 'Zm00001eb110930' => 'zma', 'Zm00001eb123210' => 'zma', 'Zm00001eb123220' => 'zma', 'Zm00001eb135720' => 'zma', 'Zm00001eb222880' => 'zma', 'Zm00001eb222900' => 'zma', 'Zm00001eb222910' => 'zma', 'Zm00001eb281940' => 'zma', 'Zm00001eb345890' => 'zma' ) $gf_id = 'HOM05D000592' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000592' ) $data_identifier = 'HOM05D000592' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 8, 'acertr' => (int) 13, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 14, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 11, 'ccan' => (int) 6, 'cde' => (int) 18, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 34, 'gra' => (int) 17, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 20, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 12, 'mbi' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 8, 'psa' => (int) 12, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 12, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1